Author Archives: Julia Developers

Efficient Aggregates in Julia

By: Julia Developers

Re-posted from: http://feedproxy.google.com/~r/JuliaLang/~3/2w-1CaVPNHc/efficient-aggregates

We recently introduced an exciting feature that has been in planning for some
time: immutable aggregate types. In fact, we have been planning to do this
for so long that this feature is the subject of our issue #13 on GitHub,
out of more than 2400 total issues so far.

Essentially, this feature drastically reduces the overhead of user-defined
types that represent small number-like values, or that wrap a small number
of other objects. Consider an RGB pixel type:

immutable Pixel
    r::Uint8
    g::Uint8
    b::Uint8
end

Instances of this type can now be packed efficiently into arrays, using
exactly 3 bytes per object. In all other respects, these objects continue
to act like normal first-class objects. To see how we might use
this, here is a function that converts an RGB image in standard 24-bit
framebuffer format to grayscale:

function rgb2gray!(img::Array{Pixel})
    for i=1:length(img)
        p = img[i]
        v = uint8(0.30*p.r + 0.59*p.g + 0.11*p.b)
        img[i] = Pixel(v,v,v)
    end
end

This code will run blazing fast, performing no memory allocation. We
have not done thorough benchmarking, but this is in fact likely to be the
fastest way to write this function in Julia from now on.

The key to this behavior is the new immutable keyword, which means
instances of the type cannot be modified. At first this sounds like
a mere restriction — how come I’m not allowed to modify one? — but
what it really means is that the object is identified with its contents,
rather than its memory address. A mutable object has “behavior”; it changes
over time, and there may be many references to the object, all of which
can observe those changes. An immutable object, on the other hand, has only
a value, and no time-varying behavior. Its location does not matter. It is
“just some bits”.

Julia has always had some immutable values, in the form of bits types,
which are used to represent fixed-bit-width numbers. It is highly intuitive
that numbers are immutable. If x equals 2, you might later change the value
of x, but it is understood that the value of 2 itself does not change.
The immutable keyword generalizes this idea to structured data types with
named fields. Julia variables and containers, including arrays, are all
still mutable. While a Pixel object itself can’t change, a new Pixel
can be written over an old one within an array, since the array is mutable.

Let’s take a look at the benefits of this feature.

  1. The compiler and GC have a lot of freedom to move and copy these objects
    around. This flexibility can be used to store data more efficiently,
    for example keeping the real and imaginary parts of a complex number in
    separate registers, or keeping only one part in a register.

  2. Immutable objects are easy to reason about. Some languages, such as C++
    and C#, provide “value types”, which have many of the benefits of immutable
    objects. However, their behavior can be confusing. Consider code like
    the following:

    item = lookup(collection, index)
    modify!(item)
    

    The question here is whether we have modified the same item that is in
    the collection, or if we have modified a local copy. In Julia there are
    only two possibilities: either item is mutable, in which case we modified the
    one and only copy of it, or it is immutable, in which case modifying it is
    not allowed.

  3. No-overhead data abstractions become possible. It is often useful to
    define a new type that simply wraps a single value, and modifies its
    behavior in some way. Our favorite modular integer example type fits this
    description:

    immutable ModInt{n} <: Integer
        k::Int
        ModInt(k) = new(mod(k,n))
    end
    

    Since a given ModInt doesn’t need to exist at a particular address, it
    can be passed to functions, stored in arrays, and so on, as efficiently as
    a single Int, with no wrapping overhead. But, in Julia, the overhead will not
    always be zero. The ModInt type information will “follow the data around”
    at compile time to the extent possible, but heap-allocated wrappers will be
    added as needed at run time. Typically these wrappers will be short-lived;
    if the final destination of a ModInt is in a ModInt array, for example,
    the wrapper can be discarded when the value is assigned. But if the value is
    only used locally inside a function, there will most likely be no wrappers
    at all.

  4. Abstractions are fully enforced. If a custom constructor is written for
    an immutable type, then all instances will be created by it. Since the
    constructed objects are never modified, the invariants provided by the
    constructor cannot be violated. At this time, uninitialized arrays are an
    exception to this rule. New arrays of “plain data” immutable types have
    unspecified contents, so it is possible to obtain an invalid value from one.
    This is usually harmless in practice, since arrays must be initialized anyway,
    and are often created through functions like zeros that do so.

  5. We can automatically type-specialize fields. Since field values at
    construction time are final, their types are too, so we learn everything
    about the type of an immutable object when it is constructed.

There are many potential optimizations here, and we have not implemented
all of them yet. But having this feature in place provides another lever to
help us improve performance over time.

For now though, we at least have a much simpler implementation of complex
numbers, and will be able to take advantage of efficient rational matrices
and other similar niceties.

Addendum: Under the hood

For purposes of calling C and writing reflective code, it helps to know a
bit about how immutable types are implemented. Before this change, we had
types AbstractKind, BitsKind, and CompositeKind, for separating which
types are abstract, which are represented by immutable bit strings, and which
are mutable aggregates. It was sometimes convenient that the type system
reflected these differences, but also a bit unwarranted since all these
types participate in the same hierarchy and follow the same subtyping rules.

Now, the type landscape is both simpler and more complex. The three Kinds
have been merged into a single kind called DataType. The type of every
value in Julia is now either a DataType, or else a tuple type (union types
still exist, but of course are always abstract). To find out the details
of a DataType’s physical representation, you must query its properties.
DataTypes have three boolean properties abstract, mutable, and
pointerfree, and an integer property size. The CompositeKind properties
names and types are still there to describe fields.

The abstract property indicates that the type was declared with the
abstract keyword and has no direct instances. mutable indicates, for
concrete types, whether instances are mutable. pointerfree means that
instances contain “just data” and no references to other Julia values.
size gives the size of an instance in bytes.

What used to be BitsKinds are now DataTypes that are immutable, concrete,
have no fields, and have non-zero size. The former CompositeKinds are
mutable and concrete, and either have fields or are zero size if they
have zero fields. Clearly, new combinations are now possible. We have
already mentioned immutable types with fields. We could have the equivalent
of mutable BitsKinds, but this combination is not exposed in the language,
since it is easily emulated using mutable fields. Another new combination
is abstract types with fields, which would allow you to declare that all
subtypes of some abstract type should have certain fields. That one is
definitely useful, and we plan to provide syntax for it.

Typically, the only time you need to worry about these things
is when calling native code, when you want to know whether some array
or struct has C-compatible data layout. This is handled by the type
predicate isbits(T).

New York Open Stats Meetup

By: Julia Developers

Re-posted from: http://feedproxy.google.com/~r/JuliaLang/~3/nGWSNSEoA3A/nyc-open-stats-meetup-announcement

I’ll be giving a talk on Julia at the New York Open Statistical Programming Meetup on May 1st. After my presentation, John Myles White and Shane Conway are going to give followup demos of statistical applications using Julia. Then we’re going to hang out and grab drinks nearby. Thanks to Harlan Harris and Drew Conway for setting the whole thing up!

Announcement:

After a brief hiatus, we are very excited to announce our May meetup will feature one of the hottest new languages in statistical computing: Julia. We are delighted to welcome Stefan Karpinski, one of the creators of Julia, to give an introduction to the language and his perspective on statistical computing.

Julia is a general-purpose, high-level, dynamic language in the tradition of Lisp, Perl, Python and Ruby. It is designed to take advantage of modern techniques for executing dynamic languages with statically-compiled performance. As part of this design, the language has an expressive type system, which programmers may leverage for dispatch and error checking — incidentally providing the compiler with useful type information. Using types is entirely optional, however: “typeless Julia” is a valid and useful subset of the language, similar to traditional dynamic languages, which nevertheless runs at statically compiled speeds.\

Julia is especially good at running Matlab and R-style programs. Given its level of performance, we envision a new era of technical computing where libraries can be developed in a high-level language instead of C or Fortran. We have also experimented with cloud API integration, and begun to develop a web-based interactive computing environment. The ultimate goal is to make cloud-based supercomputing as easy and accessible as Google Docs.

We will also hear from a mix of people who have already started developing in Julia and see some examples of what they have developed.

The meetup will follow our typical schedule: pizza will begin at 6:15pm, Stefan will begin promptly at 7pm, and we will head to The Central Bar around 8:30pm.

Update: You can see the slides for the talk here. There was no video of the talk, but hopefully the slides are informative — there are, among other things, a lot of code examples that should just work if pasted into the Julia repl.